Prof. Sundar's Homepage @ IIT Delhi

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Data Resources

Data Deposited in NCBI

Nucleotide	Protein	GEO DataSets	BioSample	Bioproject	SRA
39	91	3	1	1	1

The codes to the workflows/frameworks developed by our lab are freely availalble here: TeamSundar

Data and Resources

Sl	Codes / data	Year	Description / PubMed link
21	GeoDbind	2024	Geometric deep learning for modeling drug-target interactions
20	Stratum Corneum	2024	Atomistic model for stratum corneum lipid matrix for skin permeation studies
19	mt genome tool	2023	A systematic comparison of Human Mitochondrial Genome Assembly Tools
18	M-Ionic	2023	Prediction of metal ion binding sites from sequence using residue embeddings
17	TFactorNN	2023	A ML workflow to identify novel transcription factor binding sites in the genome
16	CRISP-Cpf1	2023	An improved ML model for classification of off-targets in CRISPR/Cpf1 system
15	CRISP-RCNN	2023	A model to understand sequence features driving specificity in CRISPR/Cas9 system
14	TCR-ESM	2023	Large protein language embeddings to predict TCR-peptide-MHC binding
13	TransDTI	2022	Transformer-based language models for estimating drug-target interactions (DTIs)
12	dNNDR	2022	Deep neural network assisted drug recommendation (dNNDR) system
11	crispr-cas9-dG	2022	A machine learning model for CRISPR/Cas9 activity prediction
10	SurvCNN	2021	A cancer survival estimation framework using image representations of omics data
9	BRCA_multiomics	2021	A deep learning model for survival and drug-response prediction in breast cancer
8	Multiomics-LUAD	2019	A predictive model for survival prediction of lung adenocarcinoma
7	CRISPcut	2019	A sgRNA design tool for CRISPR/Cas9 based experiments in human cells
6	ZiFNN	2016	Ensemble neural network model to predict DNA-binding specificity in zinc fingers
5	ZiF-Predict IHBE	2016	A webtool for zinc finger prediction based on interfacial hydrogen bond energy
4	ZiF-Predict	2010	A web server for predicting zinc fingers and their target sites
3	Zif-BASE	2009	A database of zinc finger proteins and associated resources
2	mangroves dB	2008	A comprehensive checklist of mangroves found in Pondicherry region of South India
1	Flora dB	2008	A comprehensive checklist of Flora found in Pondicherry region of South India

Indian Institute of Technology Delhi ................. Sundar Lab

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